atoms
=====

.. automodule:: abtem.atoms

   
   
   

   
   
   .. rubric:: Functions

   .. autosummary::
      :toctree:
      :template: custom-function-template.rst
   
      atoms_in_cell
      best_orthogonal_cell
      cut_cell
      decompose_affine_transform
      flip_atoms
      is_cell_hexagonal
      is_cell_orthogonal
      is_cell_valid
      merge_close_atoms
      orthogonalize_cell
      pad_atoms
      plane_to_axes
      pretty_print_transform
      rotate_atoms_to_plane
      rotation_matrix_from_plane
      rotation_matrix_to_euler
      shrink_cell
      standardize_cell
      wrap_with_tolerance