merge_close_atoms#

abtem.atoms.merge_close_atoms(atoms, tol=1e-07)[source]#

Merge atoms that are closer in distance to each other than the given tolerance.

Parameters

  • atoms (ase.Atoms) – Atoms to merge.

  • tol (float) – Atoms closer to each other than this value are merged if they have identical atomic numbers.

Returns

merged_atoms – Merged atoms.

Return type

ase.Atoms