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Reference

  • API
    • antialias
      • antialias_aperture
      • AntialiasAperture
    • array
      • concatenate
      • from_zarr
      • stack
      • ArrayObject
      • ComputableList
    • atoms
      • atoms_in_cell
      • best_orthogonal_cell
      • cut_cell
      • decompose_affine_transform
      • flip_atoms
      • is_cell_hexagonal
      • is_cell_orthogonal
      • is_cell_valid
      • merge_close_atoms
      • orthogonalize_cell
      • pad_atoms
      • plane_to_axes
      • pretty_print_transform
      • rotate_atoms_to_plane
      • rotation_matrix_from_plane
      • rotation_matrix_to_euler
      • shrink_cell
      • standardize_cell
      • wrap_with_tolerance
    • waves
      • BaseWaves
      • PlaneWave
      • Probe
      • Waves
    • scan
      • BaseScan
      • CustomScan
      • GridScan
      • LineScan
    • detectors
      • AnnularDetector
      • BaseDetector
      • FlexibleAnnularDetector
      • PixelatedDetector
      • SegmentedDetector
      • WavesDetector
    • measurements
      • BaseMeasurements
      • DiffractionPatterns
      • Images
      • IndexedDiffractionPatterns
      • PolarMeasurements
      • RealSpaceLineProfiles
      • ReciprocalSpaceLineProfiles
    • transfer
      • cartesian2polar
      • hard_aperture
      • nyquist_sampling
      • point_resolution
      • polar2cartesian
      • scherzer_defocus
      • soft_aperture
      • Aberrations
      • Aperture
      • BaseAperture
      • BaseTransferFunction
      • Bullseye
      • CTF
      • SpatialEnvelope
      • TemporalEnvelope
      • Vortex
      • Zernike
    • transform
      • ArrayObjectTransform
      • CompositeArrayObjectTransform
      • EmptyTransform
      • EnsembleTransform
      • ReciprocalSpaceMultiplication
      • WavesTransform
    • parametrizations
      • validate_parameters
      • validate_parametrization
      • validate_sigmas
      • EwaldParametrization
      • KirklandParametrization
      • LobatoParametrization
      • Parametrization
      • PengParametrization
      • functions
        • ewald
        • kirkland
        • lobato
        • peng
    • integrals
      • cutoff
      • cutoff_taper
      • interpolate_radial_functions
      • sinc
      • superpose_deltas
      • GaussianProjectionIntegrals
      • GaussianScatteringFactors
      • ProjectedScatteringFactorIntegrator
      • ProjectedScatteringFactors
      • ProjectionIntegralTable
      • ProjectionIntegrator
      • ProjectionIntegratorPlan
      • ProjectionQuadratureRule
    • phonons
      • AtomsEnsemble
      • BaseFrozenPhonons
      • DummyFrozenPhonons
      • FrozenPhonons
    • distributions
      • from_values
      • gaussian
      • uniform
      • BaseDistribution
      • DistributionFromValues
      • EnsembleFromDistributions
      • MultidimensionalDistribution
    • potentials
      • charge_density
        • add_point_charges_fourier
        • integrate_gradient_fourier
        • ChargeDensityPotential
      • gpaw
        • get_core_correction_interpolators
        • integrate_slice
        • GPAWParametrization
        • GPAWPotential
      • iam
        • BasePotential
        • CrystalPotential
        • Potential
        • PotentialArray
        • TransmissionFunction
    • tilt
      • precession_tilts
      • AxisAlignedBeamTilt
      • BaseBeamTilt
      • BeamTilt
    • visualize
      • discrete_cmap
      • make_sliders_from_ensemble_axes
      • make_toggle_hkl_button
      • show_atoms
      • AxesGrid
      • BaseMeasurementVisualization2D
      • DiffractionSpotsVisualization
      • MeasurementVisualization
      • MeasurementVisualization1D
      • MeasurementVisualization2D
    • multislice
      • allocate_multislice_measurements
      • multislice_and_detect
      • multislice_step
      • FresnelPropagator
      • MultisliceTransform
    • prism
      • bloch
        • excitation_errors
        • BlochWaves
        • StructureFactors
      • s_matrix
        • BaseSMatrix
        • SMatrix
        • SMatrixArray
      • utils
        • batch_crop_2d
        • minimum_crop
        • plane_waves
        • prism_coefficients
        • prism_wave_vectors
        • wrapped_crop_2d
        • wrapped_slices
  • Configuration

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Example gallery

Example gallery#

Welcome to the abTEM gallery. These notebooks demonstrate specific a many of the concepts learned in the

  • basic Examples that cover the basics image simulation, these examples are generally appropriate for new users. Many of these examples may also be used as a template for performing a specific common type of simulation.

  • specialized Examples that introduce a less common topic in simulation of electron microscopy. Some of these examples assume that the user have experience abTEM.

  • publication Examples that replicate published results, either fully or partially.

If you’d like to add your book to this list, simply add an entry to this gallery.yml file and open a Pull Request to add it. For more detailed instructions see our guide on contributing to abTEM.

CBED

../../_images/cbed_quickstart.png

basic

HRTEM

../../_images/hrtem_quickstart.png

basic

STEM

../../_images/stem_quickstart.png

basic

PRISM

../../_images/prism_quickstart.png

basic

SAED

../../_images/saed_quickstart.png

basic

PED

../../_images/ped_quickstart.png

basic

4D-STEM

../../_images/4d-stem_quickstart.png

basic

Animations

../../_images/animations.gif

basic

Animations

../../_images/interactions.gif

basic

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Core-loss

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CBED quickstart

By abTEM developers
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