Index

_

__init__() (abtem.antialias.AntialiasAperture method) (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.EnsembleFromDistributions method) (abtem.distributions.MultidimensionalDistribution method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.ProjectedScatteringFactorIntegrator method) (abtem.integrals.ProjectedScatteringFactors method) (abtem.integrals.ProjectionIntegralTable method) (abtem.integrals.ProjectionIntegrator method) (abtem.integrals.ProjectionIntegratorPlan method) (abtem.integrals.ProjectionQuadratureRule method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.FresnelPropagator method) (abtem.multislice.MultisliceTransform method) (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWParametrization method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.bloch.BlochWaves method) (abtem.prism.bloch.StructureFactors method) (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) (abtem.visualize.AxesGrid method) (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method) (abtem.waves.BaseWaves method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method)

A

aberration_coefficients (abtem.transfer.Aberrations property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) aberrations (abtem.waves.Probe property) Aberrations (class in abtem.transfer) abs() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) abtem.antialias module abtem.array module abtem.atoms module abtem.detectors module abtem.distributions module abtem.inelastic.phonons module abtem.integrals module abtem.measurements module abtem.multislice module abtem.parametrizations module abtem.parametrizations.functions module abtem.parametrizations.functions.ewald module abtem.parametrizations.functions.kirkland module abtem.parametrizations.functions.lobato module abtem.parametrizations.functions.peng module abtem.potentials module abtem.potentials.charge_density module abtem.potentials.gpaw module abtem.potentials.iam module abtem.prism module abtem.prism.bloch module abtem.prism.s_matrix module abtem.prism.utils module abtem.scan module abtem.tilt module abtem.transfer module abtem.transform module abtem.visualize module abtem.waves module accelerator (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) add_margin() (abtem.scan.LineScan method) add_point_charges_fourier() (in module abtem.potentials.charge_density) add_to_axes() (abtem.scan.LineScan method) add_to_plot() (abtem.scan.GridScan method) allocate_multislice_measurements() (in module abtem.multislice) angle (abtem.scan.LineScan property) angular_coordinates (abtem.measurements.DiffractionPatterns property) angular_extent (abtem.measurements.ReciprocalSpaceLineProfiles property) angular_limits (abtem.measurements.DiffractionPatterns property) angular_limits() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) angular_positions (abtem.measurements.IndexedDiffractionPatterns property) angular_sampling (abtem.measurements.DiffractionPatterns property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) angular_spread (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) AnnularDetector (class in abtem.detectors) antialias_aperture() (in module abtem.antialias) antialias_cutoff_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) antialias_valid_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

AntialiasAperture (class in abtem.antialias) aperture (abtem.waves.Probe property) Aperture (class in abtem.transfer) append() (abtem.array.ComputableList method) apply() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.multislice.MultisliceTransform method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) apply_ctf() (abtem.waves.Waves method) apply_transform() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) array (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) ArrayObject (class in abtem.array) ArrayObjectTransform (class in abtem.transform) at_position() (abtem.scan.LineScan class method) atomic_numbers (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) atoms (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) atoms_in_cell() (in module abtem.atoms) AtomsEnsemble (class in abtem.inelastic.phonons) axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) AxesGrid (class in abtem.visualize) AxisAlignedBeamTilt (class in abtem.tilt) azimuthal_offset (abtem.measurements.PolarMeasurements property) azimuthal_sampling (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property)

B

bandlimit() (abtem.measurements.DiffractionPatterns method) base_axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) base_dims (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) base_shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

base_tilt (abtem.waves.Waves property) BaseAperture (class in abtem.transfer) BaseBeamTilt (class in abtem.tilt) BaseDetector (class in abtem.detectors) BaseDistribution (class in abtem.distributions) BaseFrozenPhonons (class in abtem.inelastic.phonons) BaseMeasurements (class in abtem.measurements) BaseMeasurementVisualization2D (class in abtem.visualize) BasePotential (class in abtem.potentials.iam) BaseScan (class in abtem.scan) BaseSMatrix (class in abtem.prism.s_matrix) BaseTransferFunction (class in abtem.transfer) BaseWaves (class in abtem.waves) batch_crop_2d() (in module abtem.prism.utils) BeamTilt (class in abtem.tilt) best_orthogonal_cell() (in module abtem.atoms) BlochWaves (class in abtem.prism.bloch) block_direct() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.IndexedDiffractionPatterns method) box (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) build() (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.ProjectedScatteringFactors method) (abtem.integrals.ProjectionIntegratorPlan method) (abtem.integrals.ProjectionQuadratureRule method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.prism.s_matrix.SMatrix method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) build_integral_table() (abtem.integrals.ProjectionQuadratureRule method) Bullseye (class in abtem.transfer)

C

cartesian2polar() (in module abtem.transfer) cell (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) center_hole_cutoff (abtem.transfer.Zernike property) center_of_mass() (abtem.measurements.DiffractionPatterns method) charge() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.lobato) ChargeDensityPotential (class in abtem.potentials.charge_density) check_can_build() (abtem.waves.PlaneWave method) (abtem.waves.Probe method) clear() (abtem.array.ComputableList method) combine() (abtem.distributions.DistributionFromValues method) complex_images() (abtem.waves.Waves method) CompositeArrayObjectTransform (class in abtem.transform) ComputableList (class in abtem.array) compute() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) concatenate() (in module abtem.array) conjugate (abtem.multislice.MultisliceTransform property) convolve() (abtem.waves.Waves method) coordinates (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) copy() (abtem.antialias.AntialiasAperture method) (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.EnsembleFromDistributions method) (abtem.distributions.MultidimensionalDistribution method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.ProjectedScatteringFactors method) (abtem.integrals.ProjectionIntegratorPlan method) (abtem.integrals.ProjectionQuadratureRule method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method)

copy_to_device() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) count() (abtem.array.ComputableList method) crop() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) crossover_angle (abtem.transfer.CTF property) CrystalPotential (class in abtem.potentials.iam) ctf (abtem.waves.Probe property) CTF (class in abtem.transfer) CustomScan (class in abtem.scan) cut_cell() (in module abtem.atoms) cutoff() (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.ProjectedScatteringFactors method) (abtem.integrals.ProjectionIntegratorPlan method) (abtem.integrals.ProjectionQuadratureRule method) (in module abtem.integrals) cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) cutoff_taper() (in module abtem.integrals) cutoff_tolerance (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.ProjectionQuadratureRule property)

D

decompose_affine_transform() (in module abtem.atoms) defocus (abtem.transfer.Aberrations property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) detect() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) detectors (abtem.multislice.MultisliceTransform property) device (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) differentials() (abtem.measurements.PolarMeasurements method) diffraction_patterns() (abtem.waves.Waves method) DiffractionPatterns (class in abtem.measurements) DiffractionSpotsVisualization (class in abtem.visualize)

diffractograms() (abtem.measurements.Images method) dimensions (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) direction (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) directions (abtem.inelastic.phonons.FrozenPhonons property) discrete_cmap() (in module abtem.visualize) DistributionFromValues (class in abtem.distributions) distributions (abtem.distributions.MultidimensionalDistribution property) divide() (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.MultidimensionalDistribution method) downsample (abtem.prism.s_matrix.SMatrix property) downsample() (abtem.waves.Waves method) downsampled_gpts (abtem.prism.s_matrix.SMatrix property) dtype (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) dummy_probes() (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) DummyFrozenPhonons (class in abtem.inelastic.phonons)

E

EmptyTransform (class in abtem.transform) end (abtem.scan.GridScan property) (abtem.scan.LineScan property) endpoint (abtem.scan.GridScan property) (abtem.scan.LineScan property) energy (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) ensemble_axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) ensemble_blocks() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) ensemble_dims (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property)

ensemble_mean (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) ensemble_shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) EnsembleFromDistributions (class in abtem.distributions) EnsembleTransform (class in abtem.transform) ensure_lazy() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) ensure_real_space() (abtem.waves.Waves method) ensure_reciprocal_space() (abtem.waves.Waves method) EwaldParametrization (class in abtem.parametrizations) excitation_errors() (in module abtem.prism.bloch) exit_planes (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) exit_thicknesses (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) expand_dims() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) extend() (abtem.array.ComputableList method) extent (abtem.antialias.AntialiasAperture property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

F

fftshift (abtem.measurements.DiffractionPatterns property) finite (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.ProjectedScatteringFactors property) (abtem.integrals.ProjectionIntegratorPlan property) (abtem.integrals.ProjectionQuadratureRule property) finite_projected_potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) finite_projected_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.peng) FlexibleAnnularDetector (class in abtem.detectors) flip_atoms() (in module abtem.atoms) flip_phase (abtem.transfer.CTF property) focal_spread (abtem.transfer.CTF property) (abtem.transfer.TemporalEnvelope property) FresnelPropagator (class in abtem.multislice) from_array_and_metadata() (abtem.array.ArrayObject class method) (abtem.measurements.BaseMeasurements class method) (abtem.measurements.DiffractionPatterns class method) (abtem.measurements.Images class method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements class method) (abtem.measurements.RealSpaceLineProfiles class method) (abtem.measurements.ReciprocalSpaceLineProfiles class method) (abtem.potentials.iam.PotentialArray class method) (abtem.potentials.iam.TransmissionFunction class method) (abtem.prism.s_matrix.SMatrixArray class method) (abtem.waves.Waves class method)

from_values() (in module abtem.distributions) from_zarr() (abtem.array.ArrayObject class method) (abtem.measurements.BaseMeasurements class method) (abtem.measurements.DiffractionPatterns class method) (abtem.measurements.Images class method) (abtem.measurements.IndexedDiffractionPatterns class method) (abtem.measurements.PolarMeasurements class method) (abtem.measurements.RealSpaceLineProfiles class method) (abtem.measurements.ReciprocalSpaceLineProfiles class method) (abtem.potentials.iam.PotentialArray class method) (abtem.potentials.iam.TransmissionFunction class method) (abtem.prism.s_matrix.SMatrixArray class method) (abtem.waves.Waves class method) (in module abtem.array) frozen_phonons (abtem.potentials.iam.Potential property) FrozenPhonons (class in abtem.inelastic.phonons) full_cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

G

gaussian() (in module abtem.distributions) gaussian_charge() (in module abtem.parametrizations.functions.ewald) gaussian_filter() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) gaussian_parametrization (abtem.integrals.GaussianProjectionIntegrals property) gaussian_potential() (in module abtem.parametrizations.functions.ewald) gaussian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) GaussianProjectionIntegrals (class in abtem.integrals) GaussianScatteringFactors (class in abtem.integrals) generate_blocks() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) generate_ensemble() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) generate_slices() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method)

get_core_correction_interpolators() (in module abtem.potentials.gpaw) get_detector_region() (abtem.detectors.AnnularDetector method) get_detector_regions() (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.SegmentedDetector method) get_function() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) get_items() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) get_positions() (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) get_sliced_atoms() (abtem.potentials.iam.Potential method) get_transformed_atoms() (abtem.potentials.iam.Potential method) GPAWParametrization (class in abtem.potentials.gpaw) GPAWPotential (class in abtem.potentials.gpaw) gpts (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) grid (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) GridScan (class in abtem.scan)

H

hard_aperture() (in module abtem.transfer)

I

imag() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) Images (class in abtem.measurements) in_place (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ReciprocalSpaceMultiplication property) index() (abtem.array.ComputableList method) index_diffraction_spots() (abtem.measurements.DiffractionPatterns method) IndexedDiffractionPatterns (class in abtem.measurements) inner (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) insert() (abtem.array.ComputableList method) (abtem.transform.CompositeArrayObjectTransform method) integrate() (abtem.measurements.PolarMeasurements method) integrate_gradient() (abtem.measurements.Images method) integrate_gradient_fourier() (in module abtem.potentials.charge_density) integrate_on_grid() (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.ProjectedScatteringFactorIntegrator method) (abtem.integrals.ProjectionIntegralTable method) (abtem.integrals.ProjectionIntegrator method) integrate_radial() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) integrate_slice() (in module abtem.potentials.gpaw) integrated_center_of_mass() (abtem.measurements.DiffractionPatterns method) integration_step (abtem.integrals.ProjectionQuadratureRule property) integrator (abtem.potentials.iam.Potential property) intensities (abtem.measurements.IndexedDiffractionPatterns property) intensities_dict (abtem.measurements.IndexedDiffractionPatterns property)

intensity() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.waves.Waves method) interpolate() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) interpolate_line() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) interpolate_line_at_position() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) interpolate_radial_functions() (in module abtem.integrals) interpolation (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) is_cell_hexagonal() (in module abtem.atoms) is_cell_orthogonal() (in module abtem.atoms) is_cell_valid() (in module abtem.atoms) is_complex (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) is_lazy (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property)

K

KirklandParametrization (class in abtem.parametrizations)

L

limits (abtem.measurements.DiffractionPatterns property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) line_profiles() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method)

LineScan (class in abtem.scan) LobatoParametrization (class in abtem.parametrizations)

M

make_sliders_from_ensemble_axes() (in module abtem.visualize) make_toggle_hkl_button() (in module abtem.visualize) match_grid() (abtem.antialias.AntialiasAperture method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.GridScan method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.waves.BaseWaves method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) match_probe() (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) max() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) max_angle (abtem.detectors.PixelatedDetector property) max_angles (abtem.measurements.DiffractionPatterns property) mean() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) MeasurementVisualization (class in abtem.visualize) MeasurementVisualization1D (class in abtem.visualize) MeasurementVisualization2D (class in abtem.visualize) merge_close_atoms() (in module abtem.atoms) metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

miller_indices (abtem.measurements.IndexedDiffractionPatterns property) min() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) minimum_crop() (in module abtem.prism.utils) module abtem.antialias abtem.array abtem.atoms abtem.detectors abtem.distributions abtem.inelastic.phonons abtem.integrals abtem.measurements abtem.multislice abtem.parametrizations abtem.parametrizations.functions abtem.parametrizations.functions.ewald abtem.parametrizations.functions.kirkland abtem.parametrizations.functions.lobato abtem.parametrizations.functions.peng abtem.potentials abtem.potentials.charge_density abtem.potentials.gpaw abtem.potentials.iam abtem.prism abtem.prism.bloch abtem.prism.s_matrix abtem.prism.utils abtem.scan abtem.tilt abtem.transfer abtem.transform abtem.visualize abtem.waves MultidimensionalDistribution (class in abtem.distributions) multislice() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) multislice_and_detect() (in module abtem.multislice) multislice_step() (in module abtem.multislice) MultisliceTransform (class in abtem.multislice)

N

nbins_azimuthal (abtem.detectors.SegmentedDetector property) nbins_radial (abtem.detectors.SegmentedDetector property) no_base_chunks() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) normalize (abtem.waves.PlaneWave property) normalize() (abtem.waves.Waves method) normalize_ensemble() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) normalize_to_spot() (abtem.measurements.IndexedDiffractionPatterns method) num_configs (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) num_exit_planes (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property)

num_frozen_phonons (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) num_positions (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) num_rings (abtem.transfer.Bullseye property) num_slices (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) num_spokes (abtem.transfer.Bullseye property) nyquist_sampling (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) nyquist_sampling() (in module abtem.transfer)

O

offset (abtem.detectors.AnnularDetector property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) origin (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property)

orthogonalize_cell() (in module abtem.atoms) outer (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) outer_angle (abtem.measurements.PolarMeasurements property)

P

pad_atoms() (in module abtem.atoms) parametrization (abtem.integrals.ProjectionQuadratureRule property) Parametrization (class in abtem.parametrizations) PengParametrization (class in abtem.parametrizations) periodic (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.ProjectedScatteringFactors property) (abtem.integrals.ProjectionIntegratorPlan property) (abtem.integrals.ProjectionQuadratureRule property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.prism.s_matrix.SMatrixArray property) phase() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) phase_shift (abtem.transfer.Zernike property) phase_shift() (abtem.waves.Waves method) PixelatedDetector (class in abtem.detectors) plane (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) plane_to_axes() (in module abtem.atoms) plane_waves() (in module abtem.prism.utils) PlaneWave (class in abtem.waves) point_charge_potential() (in module abtem.parametrizations.functions.ewald) point_resolution (abtem.transfer.CTF property) point_resolution() (in module abtem.transfer) poisson_noise() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) polar2cartesian() (in module abtem.transfer) polar_binning() (abtem.measurements.DiffractionPatterns method) PolarMeasurements (class in abtem.measurements) pop() (abtem.array.ComputableList method) positions (abtem.measurements.IndexedDiffractionPatterns property) (abtem.scan.CustomScan property) (abtem.waves.Probe property) positions_dict (abtem.measurements.IndexedDiffractionPatterns property)

potential (abtem.multislice.MultisliceTransform property) (abtem.prism.s_matrix.SMatrix property) Potential (class in abtem.potentials.iam) potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.ewald) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) potential_derivative() (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) PotentialArray (class in abtem.potentials.iam) precession_tilts() (in module abtem.tilt) pretty_print_transform() (in module abtem.atoms) prism_coefficients() (in module abtem.prism.utils) prism_wave_vectors() (in module abtem.prism.utils) Probe (class in abtem.waves) profiles() (abtem.transfer.CTF method) (abtem.waves.Probe method) project() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) projected_potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) projected_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) ProjectedScatteringFactorIntegrator (class in abtem.integrals) ProjectedScatteringFactors (class in abtem.integrals) ProjectionIntegralTable (class in abtem.integrals) ProjectionIntegrator (class in abtem.integrals) ProjectionIntegratorPlan (class in abtem.integrals) ProjectionQuadratureRule (class in abtem.integrals) propagate() (abtem.multislice.FresnelPropagator method)

Q

quad_order (abtem.integrals.ProjectionQuadratureRule property)

quantum_number (abtem.transfer.Vortex property)

R

radial_binning() (abtem.measurements.DiffractionPatterns method) radial_offset (abtem.measurements.PolarMeasurements property) radial_sampling (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property) randomize() (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) real() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) RealSpaceLineProfiles (class in abtem.measurements) rechunk() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) reciprocal_space (abtem.detectors.PixelatedDetector property) (abtem.waves.Waves property) reciprocal_space_axes_metadata (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) reciprocal_space_sampling (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

ReciprocalSpaceLineProfiles (class in abtem.measurements) ReciprocalSpaceMultiplication (class in abtem.transform) rectangle_cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) reduce() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) reduce_ensemble() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) relative_difference() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) remove() (abtem.array.ComputableList method) remove_low_intensity() (abtem.measurements.IndexedDiffractionPatterns method) resample (abtem.detectors.PixelatedDetector property) reverse() (abtem.array.ComputableList method) ring_width (abtem.transfer.Bullseye property) rotate_atoms_to_plane() (in module abtem.atoms) rotation (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) rotation_matrix_from_plane() (in module abtem.atoms) rotation_matrix_to_euler() (in module abtem.atoms) round_gpts_to_interpolation() (abtem.prism.s_matrix.SMatrix method)

S

sampling (abtem.antialias.AntialiasAperture property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) scaled_parameters() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) scan() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Probe method) scattering_factor (abtem.integrals.ProjectedScatteringFactorIntegrator property) scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) (in module abtem.parametrizations.functions.peng) scattering_factor_k2() (in module abtem.parametrizations.functions.peng) scherzer_defocus (abtem.transfer.CTF property) scherzer_defocus() (in module abtem.transfer) seed (abtem.inelastic.phonons.FrozenPhonons property) SegmentedDetector (class in abtem.detectors) select_block() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) semiangle_cutoff (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.Probe property) set_aberrations() (abtem.transfer.Aberrations method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) set_axes_padding() (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method) set_ensemble_axes_metadata() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) set_ensemble_indices() (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method) set_row_titles() (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method) set_xlim() (abtem.visualize.DiffractionSpotsVisualization method) set_xunits() (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method) set_ylim() (abtem.visualize.DiffractionSpotsVisualization method) set_yunits() (abtem.visualize.BaseMeasurementVisualization2D method) (abtem.visualize.DiffractionSpotsVisualization method) (abtem.visualize.MeasurementVisualization method) (abtem.visualize.MeasurementVisualization1D method) (abtem.visualize.MeasurementVisualization2D method)

shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.EnsembleFromDistributions property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) show() (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.SegmentedDetector method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.waves.Probe method) (abtem.waves.Waves method) show_atoms() (in module abtem.visualize) shrink_cell() (in module abtem.atoms) sigmas (abtem.inelastic.phonons.FrozenPhonons property) (abtem.parametrizations.EwaldParametrization property) (abtem.parametrizations.KirklandParametrization property) (abtem.parametrizations.LobatoParametrization property) (abtem.parametrizations.Parametrization property) (abtem.parametrizations.PengParametrization property) sinc() (in module abtem.integrals) slice_limits (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) slice_thickness (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) SMatrix (class in abtem.prism.s_matrix) SMatrixArray (class in abtem.prism.s_matrix) soft (abtem.transfer.Aperture property) (abtem.transfer.CTF property) (abtem.waves.Probe property) soft_aperture() (in module abtem.transfer) sort() (abtem.array.ComputableList method) (abtem.measurements.IndexedDiffractionPatterns method) SpatialEnvelope (class in abtem.transfer) spoke_width (abtem.transfer.Bullseye property) squeeze() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) stack() (in module abtem.array) standard_deviations() (abtem.inelastic.phonons.AtomsEnsemble method) standardize_cell() (in module abtem.atoms) start (abtem.scan.GridScan property) (abtem.scan.LineScan property) std() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) step_size (abtem.detectors.FlexibleAnnularDetector property) storage_device (abtem.prism.s_matrix.SMatrixArray property) store_on_host (abtem.prism.s_matrix.SMatrix property) StructureFactors (class in abtem.prism.bloch) sum() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) superpose_deltas() (in module abtem.integrals)

T

TemporalEnvelope (class in abtem.transfer) thickness (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) tile() (abtem.measurements.Images method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.waves.Waves method) tile_scan() (abtem.measurements.DiffractionPatterns method) tilt (abtem.prism.s_matrix.SMatrix property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) to_atoms_ensemble() (abtem.inelastic.phonons.FrozenPhonons method) to_cpu (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) to_cpu() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_data_array() (abtem.measurements.IndexedDiffractionPatterns method) to_dataframe() (abtem.measurements.IndexedDiffractionPatterns method) to_diffraction_patterns() (abtem.measurements.PolarMeasurements method) to_gpu() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method)

to_hyperspy() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_image_ensemble() (abtem.measurements.PolarMeasurements method) to_images() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) to_tiff() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_zarr() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) trajectory (abtem.inelastic.phonons.AtomsEnsemble property) transforms (abtem.transform.CompositeArrayObjectTransform property) transmission_function() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) TransmissionFunction (class in abtem.potentials.iam) transmit() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) transpose (abtem.multislice.MultisliceTransform property)

U

uniform() (in module abtem.distributions) url (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property)

V

validate_parameters() (in module abtem.parametrizations) validate_parametrization() (in module abtem.parametrizations) validate_sigmas() (in module abtem.parametrizations)

values (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) Vortex (class in abtem.transfer)

W

wave_vectors (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) wavelength (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

waves (abtem.prism.s_matrix.SMatrixArray property) Waves (class in abtem.waves) WavesDetector (class in abtem.detectors) WavesTransform (class in abtem.transform) weights (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) width() (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) wiener_snr (abtem.transfer.CTF property) window_extent (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_offset (abtem.prism.s_matrix.SMatrixArray property) wrap_with_tolerance() (in module abtem.atoms) wrapped_crop_2d() (in module abtem.prism.utils) wrapped_slices() (in module abtem.prism.utils)

X

x_ray_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.lobato)

Z

Zernike (class in abtem.transfer)